Contribution of KIR3DL1/3DS1 to ankylosing spondylitis in human leukocyte antigen-B27 Caucasian populations

Killer cell immunoglobulin-like receptors (KIRs) and human leukocyte antigen (HLA) loci are both highly polymorphic, and some HLA class I molecules bind and trigger cell-surface receptors specified by KIR genes. We examined whether the combination of KIR3DS1/3DL1 genes in concert with HLA-B27 genotypes is associated with susceptibility to ankylosing spondylitis (AS). Two HLA-B27-positive Caucasian populations were selected, one from Spain (71 patients and 105 controls) and another from the Azores (Portugal) (55 patients and 75 controls). All were typed for HLA-B and KIR (3DS1 and 3DL1) genes. Our results show that in addition to B27, the allele 3DS1 is associated with AS compared with B27 controls (p < 0.0001 and p < 0.003 in the Spanish population and Azoreans, respectively). We also observed that the association of KIR3DS1 to AS was found in combination with HLA-B alleles carrying Bw4-I80 in trans position in the Spanish population (30.9% in AS versus 15.2% in B27 controls, p = 0.02, odds ratio (OR) = 2.49) and in Azoreans (27.2% in AS versus 8.7% in B27 controls, p = 0.01, OR = 4.4 in Azoreans). On the other hand, 3DL1 was decreased in patients compared with B27 controls (p < 0.0001 in the Spanish population and p < 0.003 in Azoreans). The presence of this allele in combination with Bw4-I80 had a protective effect against the development of AS in the Spanish population (19.7% in AS, 35.2% in B27 controls; p = 0.03, OR = 0.45). The presence of KIR3DS1 or KIR3DL1 in combination with HLA-B*27s/HLA-B Bw4-I80 genotypes may modulate the development of AS. The susceptibility to AS could be determined by the overall balance of activating and inhibitory composite KIR-HLA genotypes.     

The Potential of C4 Perennial Grasses for Developing a Global BIOHEAT Industry

Unprecedented opportunities for biofuel development are occurring as a result of rising fossil fuel prices, the need to reduce greenhouse gases, and growing energy security concerns. An estimated 250 million hectares (ha) of farmland could be utilized globally to develop a bioenergy industry if efficient and economical perennial biomass crops and bioenergy conversion systems are employed. In temperate zones, C₄ or warm-season grass research and development efforts have found switchgrass (Panicum virgatum) and Miscanthus capable of producing biomass yields of 10 to 20 oven dried tonnes (ODT)/ha/yr, while in tropical areas Erianthus and napier grass (Pennisetum purpureum) are producing 25 to 35 ODT/ha/yr. The potential to annually produce 100 barrels of oil energy equivalent/ha with a 25:1 energy output to input ratio appears achievable with high-yielding, N-fixing warm-season grasses grown on marginal lands in the tropics. Commercialization of densified herbaceous plant species has been slow because of the relatively high alkali and chlorine contents of the feedstocks, which leads to clinker formation and the fouling of boilers. This challenge can be overcome by improving biomass quality through advances in plant breeding and cultural management to reduce the chlorine, alkali, and silica content and through the use of new combustion technologies.

Warm-season grasses can be readily densified provided suitable grinding and densification equipment and pressure are utilized. The major advantages of producing densified warm-season grasses for BIOHEAT include: it is the most efficient strategy to use marginal farmlands in most temperate and tropical climates to collect solar radiation; it has an excellent energy balance; the feedstocks can be used conveniently in a variety of energy applications; and it is relatively environmentally friendly. Densified warm-season grass biofuels are poised to become a major global fuel source because they can meet some heating requirements at less cost than all other alternatives available today.     

Multicopy tRNA genes functionally suppress mutations in yeast eIF-2 alpha kinase GCN2: evidence for separate pathways coupling GCN4 expression to unchanged tRNA.

GCN2 is a protein kinase that stimulates translation of GCN4 mRNA in amino acid-starved cells by phosphorylating the alpha subunit of translation initiation factor 2 (eIL-2). We isolated multicopy plasmids that overcome the defective derepression of GCN4 and its target genes caused by the leaky mutation gcn2-507. One class of plasmids contained tRNA(His) genes and conferred efficient suppression only when cells were starved for histidine; these plasmids suppressed a gcn2 deletion much less efficiently than they suppressed gcn2-507. This finding indicates that the reduction in GCN4 expression caused by gcn2-507 can be overcome by elevating tRNA(His) expression under conditions in which the excess tRNA cannot be fully aminoacylated. The second class of suppressor plasmids all carried the same gene encoding a mutant form of tRNA(Val) (AAC) with an A-to-G transition at the 3' encoded nucleotide, a mutation shown previously to reduce aminoacylation of tRNA(Val) in vitro. In contrast to the wild-type tRNA(His) genes, the mutant tRNA(Val) gene efficiently suppressed a gcn2 deletion, and this suppression was independent of the phosphorylation site on eIF-2 alpha (Ser-51). Overexpression of the mutant tRNA(Val) did, however, stimulate GCN4 expression at the translational level. We propose that the multicopy mutant tRNA(Val) construct leads to an accumulation of uncharged tRNA(Val) that derepresses GCN4 translation through a pathway that does not involve GCN2 or eIF-2 alpha phosphorylation. This GCN2-independent pathway was also stimulated to a lesser extent by the multicopy tRNA(His) constructs in histidine-deprived cells. Because the mutant tRNA(Val) exacerbated the slow-growth phenotype associated with eIF-2 alpha hyperphosphorylation by an activated GCN2c kinase, we suggest that the GCN2-independent derepression mechanism involves down-regulation of eIF-2 activity.     

Slowly adapting stretch-receptor organs: Periodic stimulation with and without perturbations

The length of isolated slowly adapting stretch-receptor organs (SAO) from crayfish was submitted to approximately sinusoidal modulations of 0.030–0.800 mm at frequencies of about 0.2, 1.0 or 3.0 cps. Sines were imposed either by themselves (clean) or mixed with (perturbed by) fast irregular length fluctuations or jitter. The amplitude of the latter remained within a specified fraction of the modulation, usually two-thirds (or x0.66), though from one twentieth to twice (or x0.05–2.00) were explored. The afferent impulse discharge was recorded: rate over bins of about 1/10 of the period was plotted as function of ongoing time. Within stationary epochs, average cycles were analyzed primarily in terms of lengths and discharge intensities. Each point in the displays corresponded to a particular bin along the average cycle, the abscissa and the ordinate being the length and the corresponding discharge rate, respectively; points were numbered in the order of their generation. Similar displays were constructed for rate vs velocity, rate vs acceleration, and rate-change vs velocity. Experiments without jitter. The non-perturbed state. With 0.2 and 1.0 cps, the rate vs length display had a clockwise loop with a flat extension to the left. The SAO at its shortest did not discharge and remained silent for some time. As length augmented, it eventually started firing, reaching maximum rate while being stretched (lead) or at maximum length. While length decayed, the organ fired less, slowing down, stopping at a length greater than where it had started, and then remaining silent until the end of the cycle. With 3.0 cps, the display had a counterclockwise loop with a flat extension on the left. The SAO did not discharge at its shortest, and fired more during relaxation than during stretching, peaking when relaxing (lag) and stopping at a length greater than where it had started. Artificial introduction of time separations between length and rate converted displays into acceptably straight lines only in a few, usually 0.2 cps, cases. The rate vs length relation exhibited consistent departures from monotonic increase and from linearity: departures were large fractions of the overall swings involving flat extensions, leads, lags, saturation effects, asymmetric rate sensitivities, and locking (which was frequent with 1.0 or 3.0 cps and could conceivably be more common with faster modulations). Other experimental paradigms have demonstrated multivaiued steady-state-rate-length relations. The variability from cycle to cycle of the rate in a particular bin was high or low for bins with low or high rates, respectively. Rate vs velocity plots were counter-clockwise loops with a base upon the abscissae, higher rates when velocity was decaying than when augmenting, and maxima at non-negative velocities. Rate-change vs velocity plots showed shortening associated with either discharge, decreases or small changes, and lengthenings associated with discharge increases, greater when augmenting if at 0.2 cps or when decaying if at 3.0 cps. Rate vs stimulus acceleration plots were, for the three tested frequencies, counterclockwise loops with a base upon the abscissae and higher rates when acceleration was decaying than when augmenting, suggesting a particular role in sensing accelerations. The sensitivity to length was evaluated by comparing the rate-swings at each frequency using identical bin-widths and depths. This procedure is considered to be most meaningful physiologically. Sensitivity was contingent upon the bin-width: with small bins (30 and 120 ms) it was highest for 3.0 cps, with intermediate bins (160 ms) it was highest for 1.0 cps, and with larger bins it was practically uniform. Differences involved factors of under x1.7. Experiments with jitter. The perturbed state. Jitter changed radically the rate vs length displays, converting all of them into clockwise folium-like loops, which implied a shift from lag to lead at 3.0 cps. Introduction of appropriate lags brought points acceptably close to straight, positively sloped segments: this occurred often at 0.2 cps, sometimes at 1.0 cps, and exceptionally at 3.0 cps. Jitter altered the variability profile along the cycle, decreasing peak variability and not affecting or increasing the minimum; variability along the cycle was thus reduced and uniformed and identification of stimuli on the basis of discharges was improved. Jitter amplitude was an important issue. The larger ones, about the modulation size, increased the lowest bin-rates, particularly at 0.2 and 1.0 cps, and increased the peaks at 0.2 cps, decreasing them at 1.0 and 3.0 cps. The smaller jitter, about 1/10 of the modulation, affected the lowest rates little, but increased the peak rate at 0.2 cps, decreasing it at 1.0 and 3.0 cps; display shapes changed little. A qualitative model of the SAO involves subsystems with linear features, as well as rectification, stiction-like and saturation-like properties. Depending upon back-ground length, modulation depth, jitter and several other issues, the organ can perform frankly nonlinearly, piece-wise linearly or linearly. Within each context, a particular stimulus is of interest and can be referred to as the signal; others are not, and can be referred to as noise, acting as perturbations. Small, erratic perturbations influence strongly transduction of large steps or sines, simplifying and making it more proportionate. Large regular perturbations act upon small signals too, but their influence has been explored less extensively.Supported by grants from NIH and NSF     

Multivalued stimulus-response relation in isolated elasmobranch utricles

The relation between a maintained spatial orientation and the corresponding fully adapted discharge rate was multivalued in all the afferents tonically sensitive to maintained spatial orientation observed in isolated utricles of Rhinobates productus. The spread of rate values was of the order of changes produced by natural tilts. The occurrence of multivaluedness in isolated receptors indicated that peripheral issues are sufficient. Two factors contributed: firstly, the side from which the orientation had been reached (i.e. hysteresis): higher adapted rates occurred when the preceding orientation was characterized by lower rates and when the corresponding transition caused acceleration; secondly, spontaneous rate variations, some of which resembled markedly, and interacted with, the effects of tilts. It was not possible to identify the basic mechanisms underlying these factors. The multivaluedness in the coding of maintained position, because of its constancy and magnitude, cannot be ignored. It, as well as the sensitivity to fast transients, must be taken into account in utricular models, in evaluations of information transmission, and in psychophysical explorations.Supported by grants (to J.P.S.) from NIH and NSF, and by NIH fellowships (to G.E.W. and R.B.) The tilting equipment was built with funds from the United Cerebral Palsy Foundation     

Dynamic and static hysteresis in crayfish stretch receptors

This report calls attention to the magnitude and pervasiveness of hysteresis in the coding from length to afferent discharges in crayfish stretch receptor organs (SRO's). The influence of previous lengths on the rate that corresponded to a particular length L was manifest by a substantial excess of that encountered when L was arrived at from a shorter value over that when arrived at from a longer one. Hysteretic loops were present under dynamic conditions when length was modulated quasi-sinusoidally in the length vs. rate Lissajous plots of both the slowly and the fast-adapting organs (SAO, FAO), either not perturbed or perturbed. Loops became narrower with increasing frequency (except for when 1 to 1 locking appeared, Diez Martínez and Segundo, 1983). Hysteretic loops were present under static conditions when length changes were step-like, and fully adapted rates were noted in the SAO and in the perturbed FAO.Earlier reports suggest that hysteresis reflects jointly at least mechanical and electrogenic factors in the length-to-local dendritic effects and in the generator potential to discharge stages.Several models, either mechanical or mathematical, reveal hysteretic behavior. Detailed analysis has not been performed except for one instance (Chua and Bass, 1972) where, for example, loop-narrowing at higher frequencies occurs only with certain weighting functions whose physiological significance is as yet obscure.Hysteresis may be more widespread than suspected in sensory (and perhaps other) systems: it involves a multi-valuedness that raises the issue of how central mechanisms infer stimulus magnitude retrospectively from the discharge.Supported by funds from the Brain Research Institute and by a scholarship to ODM from the Departmento de Becas, Universidad Nacional Autónoma de México (UNAM)     

The defense response of germinating maize embryos against fungal infection: a proteomics approach

Pathogen attack on plants results in numerous host-specific biochemical responses, the activation of some of them being critical for the ability of the plant to withstand disease. We have used high-resolution two-dimensional gel electrophoresis (2-DE) and mass spectrometry to identify proteins that are differentially expressed in response to fungal infection in maize embryos. Differential spots corresponding to induced or repressed proteins were apparent in silver stained 2-DE gels of proteins extracted from sterile and fungal-infected germinating embryos. Selected spots were subjected to tryptic digestion followed by identification using matrix-assisted laser desorption/ionization-time of flight-mass spectrometry and nanospray ion-trap tandem mass spectrometry. Among the proteins induced in response to infection are proteins involved in protein synthesis, or in protein folding and stabilization, as well as proteins involved in oxidative stress tolerance. Additionally, the accumulation of specific pathogenesis-related proteins in tissues of the fungal-infected germinating embryos was studied by 2-DE and immunoblotting.     

Endophytic nitrogen fixation in sugarcane: present knowledge and future applications

In Brazil the long-term continuous cultivation of sugarcane with low N fertiliser inputs, without apparent depletion of soil-N reserves, led to the suggestion that N₂-fixing bacteria associated with the plants may be the source of agronomically significant N inputs to this crop. From the 1950s to 1970s, considerable numbers of N₂-fixing bacteria were found to be associated with the crop, but it was not until the late 1980s that evidence from N balance and ¹⁵N dilution experiments showed that some Brazilian varieties of sugarcane were able to obtain significant contributions from this source. The results of these studies renewed the efforts to search for N₂-fixing bacteria, but this time the emphasis was on those diazotrophs that infected the interior of the plants. Within a few years several species of such `endophytic diazotrophs' were discovered including Gluconacetobacter diazotrophicus, Herbaspirillum seropedicae, H. rubrisubalbicansand Burkholderia sp. Work has continued on these endophytes within sugarcane plants, but to date little success has been attained in elucidating which endophyte is responsible for the observed BNF and in what site, or sites, within the cane plants the N₂ fixation mainly occurs. Until such important questions are answered further developments or extension of this novel N₂-fixing system to other economically important non-legumes (e.g. cereals) will be seriously hindered. As far as application of present knowledge to maximise BNF with sugarcane is concerned, molybdenum is an essential micronutrient. An abundant water supply favours high BNF inputs, and the best medium term strategy to increase BNF would appear to be based on cultivar selection on irrigated N deficient soils fertilised with Mo.